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Collage of Research subjects

2016

Banerjee S, Guedj J, Ribeiro RM, Moses M, Perelson AS. Estimating biologically relevant parameters under uncertainty for experimental within-host murine West Nile virus infection. Journal of the Royal Society Interface. 2016;13(117). doi: 10.1098/rsif.2016.0130. PubMed PMID: WOS:000378311800013.

Byrum JR, Fricke M, Tafoya J, Moses M, Cannon JL. Quantitating dendritic cell clustering in the lymph node. Journal of Immunology. 2016;196. PubMed PMID: WOS:000380288301319.

Cervena B, Brant SV, Fairet E, Shirley MH, Petrzelkova KJ, Modry D. Schistosoma mansoni in Gabon: Emerging or Ignored? American Journal of Tropical Medicine and Hygiene. 2016;95(4):849-51. doi: 10.4269/ajtmh.16-0446. PubMed PMID: WOS:000400206500025.

Devkota R, Brant SV, Loker ES. A genetically distinct Schistosoma from Radix luteola from Nepal related to Schistosoma turkestanicum: A phylogenetic study of schistosome and snail host. Acta Tropica. 2016;164:45-53. doi: 10.1016/j.actatropica.2016.08.015. PubMed PMID: WOS:000389087700008.

Ebbs ET, Loker ES, Davis NE, Flores V, Veleizan A, Brant SV. Schistosomes with wings: how host phylogeny and ecology shape the global distribution of Trichobilharzia querquedulae (Schistosomatidae). International Journal for Parasitology. 2016;46(10):669-77. doi: 10.1016/j.ijpara.2016.04.009. PubMed PMID: WOS:000383303100007.

Ernst CM, Hanelt B, Buddle CM. PARASITISM OF GROUND BEETLES (COLEOPTERA: CARABIDAE) BY A NEW SPECIES OF HAIRWORM (NEMATOMORPHA: GORDIIDA) IN ARCTIC CANADA. Journal of Parasitology. 2016;102(3):327-35. doi: 10.1645/15-863. PubMed PMID: WOS:000378093400005.

Fakhar M, Ghobaditara M, Brant SV, Karamian M, Gohardehi S, Bastani R. Phylogenetic analysis of nasal avian schistosomes (Trichobilharzia) from aquatic birds in Mazandaran Province, northern Iran. Parasitology International. 2016;65(2):151-8. doi: 10.1016/j.parint.2015.11.009. PubMed PMID: WOS:000369199000010.

Forrest S, Mitchell M. Adaptive Computation: The Multidisciplinary Legacy of John H. Holland. Communications of the Acm. 2016;59(8):58-63. doi: 10.1145/2964342. PubMed PMID: WOS:000381424900020.

Fricke GM, Letendre KA, Moses ME, Cannon JL. Persistence and Adaptation in Immunity: T Cells Balance the Extent and Thoroughness of Search. Plos Computational Biology. 2016;12(3). doi: 10.1371/journal.pcbi.1004818. PubMed PMID: WOS:000376583800033.

Hansen VL, Schilkey FD, Miller RD. Immune regulation during pregnancy in a model marsupial, the gray short-tailed opossum Monodelphis domestica. Integrative and Comparative Biology. 2016;56:E83-E. PubMed PMID: WOS:000372457600333.

Hansen VL, Schilkey FD, Miller RD. Transcriptomic Changes Associated with Pregnancy in a Marsupial, the Gray Short-Tailed Opossum Monodelphis domestica. Plos One. 2016;11(9). doi: 10.1371/journal.pone.0161608. PubMed PMID: WOS:000383254800013.

Harkins C, Shannon R, Papes M, Schmidt-Rhaesa A, Hanelt B, Bolek MG. Using Gordiid cysts to discover the hidden diversity, potential distribution, and new species of Gordiids (Phylum Nematomorpha). Zootaxa. 2016;4088(4):515-30. PubMed PMID: WOS:000372780200003.

Hey F, Giblett S, Forrest S, Herbert C, Pritchard C. Phosphorylations of Serines 21/9 in Glycogen Synthase Kinase 3 alpha/beta Are Not Required for Cell Lineage Commitment or WNT Signaling in the Normal Mouse Intestine. Plos One. 2016;11(6). doi: 10.1371/journal.pone.0156877. PubMed PMID: WOS:000377564000027.

Hoard B, Jacobson B, Manavi K, Tapia L. Extending rule-based methods to model molecular geometry and 3D model resolution. Bmc Systems Biology. 2016;10. doi: 10.1186/s12918-016-0294-z. PubMed PMID: WOS:000381482300004.

Jenny MJ, Walton WC, Payton SL, Powers JM, Findlay RH, O'Shields B, et al. Transcriptomic evaluation of the American oyster, Crassostrea virginica, deployed during the Deepwater Horizon oil spill: Evidence of an active hydrocarbon response pathway. Marine Environmental Research. 2016;120:166-81. doi: 10.1016/j.marenvres.2016.08.006. PubMed PMID: WOS:000384852900018.

Krasnec KV, Papenfuss AT, Miller RD. The UT family of MHC class I loci unique to non-eutherian mammals has limited polymorphism and tissue specific patterns of expression in the opossum. Bmc Immunology. 2016;17. doi: 10.1186/s12865-016-0181-9. PubMed PMID: WOS:000387173600001.

Larragoite ET, Tacchi L, LaPatra SE, Salinas I. An attenuated virus vaccine appears safe to the central nervous system of rainbow trout (Oncorhynchus mykiss) after intranasal delivery. Fish & Shellfish Immunology. 2016;49:351-4. doi: 10.1016/j.fsi.2016.01.006. PubMed PMID: WOS:000370884200038.

Levin D, Forrest S, Banerjee S, Clay C, Cannon J, Moses M, et al. A spatial model of the efficiency of T cell search in the influenza-infected lung. Journal of Theoretical Biology. 2016;398:52-63. doi: 10.1016/j.jtbi.2016.02.022. PubMed PMID: WOS:000375357400006.

Lu L, Zhang S-M, Mutuku MW, Mkoji GM, Loker ES. Relative compatibility of Schistosoma mansoni with Biomphalaria sudanica and B-pfeifferi from Kenya as assessed by PCR amplification of the S-mansoni ND5 gene in conjunction with traditional methods. Parasites & Vectors. 2016;9. doi: 10.1186/s13071-016-1457-x. PubMed PMID: WOS:000372439700006.

Magadan S, Tacchi L, Heimroth R, Salinas I. Characterization oft cell receptors in African lungfish (Protopterus dolloi) and their role in mucosal immunity. Fish & Shellfish Immunology. 2016;53:100-. PubMed PMID: WOS:000377730400129.

Manavi K, Jacobson B, Hoard B, Tapia L. Influence of model resolution on geometric simulations of antibody aggregation. Robotica. 2016;34(8):1754-76. doi: 10.1017/s0263574716000199. PubMed PMID: WOS:000381129500005.

Moses M, Bezerra G, Edwards B, Brown J, Forrest S. Energy and time determine scaling in biological and computer designs. Philosophical Transactions of the Royal Society B-Biological Sciences. 2016;371(1701). doi: 10.1098/rstb.2015.0446. PubMed PMID: WOS:000384460600009.

Mrass P, Oruganti SR, Byrum JR, Moses ME, Cannon JL. ROCK is essential for directionally persistent migration of CD8+effector T cells within inflamed lung. Journal of Immunology. 2016;196. PubMed PMID: WOS:000380288302032.

Pena JJ, Adema CM. The Planorbid Snail Biomphalaria glabrata Expresses a Hemocyanin-Like Sequence in the Albumen Gland. Plos One. 2016;11(12). doi: 10.1371/journal.pone.0168665. PubMed PMID: WOS:000391229300019.

Salinas I, Sunyer OJ, Hansen JD. CIRNAS: Collaborative immune reagent network for aquacultured species. Fish & Shellfish Immunology. 2016;53:100-1. PubMed PMID: WOS:000377730400130.

Sanchez MC, Parra AS, von Cabanlong C, Cupit PM, Cunningham C. THE EFFECTS OF PRAZIQUANTEL ON THE TEMPORAL INTERACTION BETWEEN THE HELMINTH PARASITE SCHISTOSOMA MANSONI AND ITS MURINE HOST. American Journal of Tropical Medicine and Hygiene. 2017;95(5):31-. PubMed PMID: WOS:000412851501090.

Sepahi A, Casadei E, Tacchi L, LaPatra SE, Salinas I. Tissue microenvironments within the nasal mucosa of rainbow trout compartimentalize nasal immune responses. Fish & Shellfish Immunology. 2016;53:81-2. PubMed PMID: WOS:000377730400076. 

Sepahi A, Casadei E, Tacchi L, Munoz P, LaPatra SE, Salinas I. Tissue Microenvironments in the Nasal Epithelium of Rainbow Trout (Oncorhynchus mykiss) Define Two Distinct CD8 alpha(+) Cell Populations and Establish Regional Immunity. Journal of Immunology. 2016;197(11):4453-63. doi: 10.4049/jimmunol.1600678. PubMed PMID: WOS:000389635300032.

Sepahi A, Cordero H, Goldfine H, Esteban MA, Salinas I. Symbiont-derived sphingolipids modulate mucosal homeostasis and B cells in teleost fish. Scientific Reports. 2016;6. doi: 10.1038/srep39054. PubMed PMID: WOS:000390239600001.

Sepahi A, Tacchi L, LaPatra SE, Salinas I. CCL19-1 A mucosal chemokine specialized in rainbow trout nasal immunity. Fish & Shellfish Immunology. 2016;53:98-. PubMed PMID: WOS:000377730400123.

Sepahi A, Salinas I. The evolution of nasal immune systems in vertebrates. Molecular Immunology. 2016;69:131-8. doi: 10.1016/j.molimm.2015.09.008. PubMed PMID: WOS:000368867800016.

Takizawa F, Xu Z, Parra D, Gomez D, LaPatra S, Salinas I, et al. Depletion of IgT plus B cells in rainbow trout points to an essential role of IgT in microbiome homeostasis and clearance of mucosal pathogens. Fish & Shellfish Immunology. 2016;53:75-. PubMed PMID: WOS:000377730400056.

Tapia L, Cortes J, Shehu A, Chen JL. Foreword on special issue on robotics methods for structural and dynamic modeling of molecular systems. Robotica. 2016;34(8):1677-8. doi: 10.1017/s0263574716000370. PubMed PMID: WOS:000381129500001.

Winner KRK, Steinkamp MP, Lee RJ, Swat M, Muller CY, Moses ME, et al. Spatial Modeling of Drug Delivery Routes for Treatment of Disseminated Ovarian Cancer. Cancer Research. 2016;76(6):1320-34. doi: 10.1158/0008-5472.can-15-1620. PubMed PMID: WOS:000375851600005.

Zhang S-M, Loker ES, Sullivan JT. Pathogen-associated molecular patterns activate expression of genes involved in cell proliferation, immunity and detoxification in the amebocyte-producing organ of the snail Biomphalaria glabrata. Developmental and Comparative Immunology. 2016;56:25-36. doi: 10.1016/j.dci.2015.11.008. PubMed PMID: WOS:000369196900004.