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Collage of Research subjects

2015

Adema CM, Loker ES. Digenean-gastropod host associations inform on aspects of specific immunity in snails. Developmental and Comparative Immunology. 2015;48(2):275-83. doi: 10.1016/j.dci.2014.06.014. PubMed PMID: WOS:000347362200003.

Adema CM. Fibrinogen-Related Proteins (FREPs) in Mollusks. In: Hsu E, DuPasquier L, editors. Pathogen-Host Interactions: Antigenic Variation V Somatic Adaptations. Results and Problems in Cell Differentiation. 572015. p. 111-29.

Ansari TH, Bertozzi T, Miller RD, Gardner MG. MHC in a monogamous lizard - Characterization of class I MHC genes in the Australian skink Tiliqua rugosa. Developmental and Comparative Immunology. 2015;53(2):320-7. doi: 10.1016/j.dci.2015.07.012. PubMed PMID: WOS:000362138500005.

Barquin A, McGehee B, Sedam RT, Gordy WL, Hanelt B, de Valdez MRW. CALLING BEHAVIOR OF MALE ACHETA DOMESTICUS CRICKETS INFECTED WITH PARAGORDIUS VARIUS (NEMATOMORPHA: GORDIIDA). Journal of Parasitology. 2015;101(4):393-7. doi: 10.1645/15-765.1. PubMed PMID: WOS:000360297300001.

Bolek MG, Schmidt-Rhaesa A, Cristina De Villalobos L, Hanelt B. Phylum Nematomorpha. Thorp JH, Rogers DC, editors2015. 303-26 p.

Canini L, DebRoy S, Marino Z, Conway JM, Crespo G, Navasa M, et al. Severity of liver disease affects HCV kinetics in patients treated with intravenous silibinin monotherapy. Antiviral Therapy. 2015;20(2):149-55. doi: 10.3851/imp2806. PubMed PMID: WOS:000359909200005.

Chang C, Cameron P, Elliott J, Perelson A, Roche M, Dantanarayana A, et al. Time-associated changes in cell-associated HIV RNA in HIV-infected subjects on suppressive antiretroviral therapy - implications for clinical trials of cure interventions. Journal of the International Aids Society. 2015;18. doi: 10.7448/ias.18.5.20567. PubMed PMID: WOS:000358675700007.

Chiang H-T, Malone N, Lesser K, Oishi M, Tapia L, Ieee. Path-Guided Artificial Potential Fields with Stochastic Reachable Sets for Motion Planning in Highly Dynamic Environments. 2015 Ieee International Conference on Robotics and Automation. IEEE International Conference on Robotics and Automation ICRA2015. p. 2347-54.

Chiang H-T, Rackley N, Tapia L, Ieee. Stochastic Ensemble Simulation Motion Planning in Stochastic Dynamic Environments. 2015 Ieee/Rsj International Conference on Intelligent Robots and Systems. IEEE International Conference on Intelligent Robots and Systems2015. p. 3836-43.

Conway JM, Perelson AS. Post-treatment control of HIV infection. Proceedings of the National Academy of Sciences of the United States of America. 2015;112(17):5467-72. doi: 10.1073/pnas.1419162112. PubMed PMID: WOS:000353554000062.

Coustau C, Gourbal B, Duval D, Yoshino TP, Adema CM, Mitta G. Advances in gastropod immunity from the study of the interaction between the snail Biomphalaria glabrata and its parasites: A review of research progress over the last decade. Fish & Shellfish Immunology. 2015;46(1):5-16. doi: 10.1016/j.fsi.2015.01.036. PubMed PMID: WOS:000358805300003.

Cunningham C, Robledo JAF. Molluscan immunology. Fish & Shellfish Immunology. 2015;46(1):1-. doi: 10.1016/j.fsi.2015.05.015. PubMed PMID: WOS:000358805300001.

Cupit PM, Cunningham C. What is the mechanism of action of praziquantel and how might resistance strike? Future Medicinal Chemistry. 2015;7(6):701-5. doi: 10.4155/fmc.15.11. PubMed PMID: WOS:000354939500007.

Dahari H, Shteingart S, Gafanovich I, Cotler SJ, D'Amato M, Pohl RT, et al. Sustained virological response with intravenous silibinin: individualized IFN-free therapy via real-time modelling of HCV kinetics. Liver International. 2015;35(2):289-94. doi: 10.1111/liv.12692. PubMed PMID: WOS:000348714500001.

Devkota R, Brant SV, Loker ES. The Schistosoma indicum species group in Nepal: presence of a new lineage of schistosome and use of the Indoplanorbis exustus species complex of snail hosts. International Journal for Parasitology. 2015;45(13):857-70. doi: 10.1016/j.ijpara.2015.07.008. PubMed PMID: WOS:000366069700006.

Dheilly NM, Duval D, Mouahid G, Emans R, Allienne J-F, Galinier R, et al. A family of variable immunoglobulin and lectin domain containing molecules in the snail Biomphalaria glabrata. Developmental and Comparative Immunology. 2015;48(1):234-43. doi: 10.1016/j.dci.2014.10.009. PubMed PMID: WOS:000347263500026.

Echevarria D, Gutfraind A, Boodram B, Major M, Del Valle S, Cotler SJ, et al. Mathematical Modeling of Hepatitis C Prevalence Reduction with Antiviral Treatment Scale-Up in Persons Who Inject Drugs in Metropolitan Chicago. Plos One. 2015;10(8). doi: 10.1371/journal.pone.0135901. PubMed PMID: WOS:000359926900048.

Faust A, Malone N, Tapia L, Ieee. Preference-balancing Motion Planning under Stochastic Disturbances. 2015 Ieee International Conference on Robotics and Automation. IEEE International Conference on Robotics and Automation ICRA2015. p. 3555-62.

Flores V, Brant SV, Loker ES. AVIAN SCHISTOSOMES FROM THE SOUTH AMERICAN ENDEMIC GASTROPOD GENUS CHILINA (PULMONATA: CHILINIDAE), WITH A BRIEF REVIEW OF SOUTH AMERICAN SCHISTOSOME SPECIES. Journal of Parasitology. 2015;101(5):565-76. PubMed PMID: WOS:000364147000009.

Graw F, Martin DN, Perelson AS, Uprichard SL, Dahari H. Quantification of Hepatitis C Virus Cell-to-Cell Spread Using a Stochastic Modeling Approach. Journal of Virology. 2015;89(13):6551-61. doi: 10.1128/jvi.00016-15. PubMed PMID: WOS:000355593000004.

Guedj J, Canini L, Cotler SJ, Dahari H. Effect of Interferon-Alpha Therapy on Hepatitis D Virus Reply. Hepatology. 2015;61(6):2118-9. doi: 10.1002/hep.27594. PubMed PMID: WOS:000354824700047.

Hanelt B, Schmidt-Rhaesa A, Bolek MG. Cryptic species of hairworm parasites revealed by molecular data and crowdsourcing of specimen collections. Molecular Phylogenetics and Evolution. 2015;82:211-8. doi: 10.1016/j.ympev.2014.09.010. PubMed PMID: WOS:000346219800018.

Hansen VL, Miller RD. The Evolution and Structure of Atypical T Cell Receptors. In: Hsu E, DuPasquier L, editors. Pathogen-Host Interactions: Antigenic Variation V Somatic Adaptations. Results and Problems in Cell Differentiation. 572015. p. 265-78.

Hecker JP, Moses ME. Beyond pheromones: evolving error-tolerant, flexible, and scalable ant-inspired robot swarms. Swarm Intelligence. 2015;9(1):43-70. doi: 10.1007/s11721-015-0104-z. PubMed PMID: WOS:000349915900003.

Horak P, Mikes L, Lichtenbergova L, Skala V, Soldanova M, Brant SV. Avian Schistosomes and Outbreaks of Cercarial Dermatitis. Clinical Microbiology Reviews. 2015;28(1):165-90. doi: 10.1128/cmr.00043-14. PubMed PMID: WOS:000347460400007.

Jacobson BD, Manavi K, Atlas SR, Tapia L. Impact of Structural and Dynamical Complexity on Kinesin Kinetics. Biophysical Journal. 2015;108(2):138A-9A. PubMed PMID: WOS:000359471700690.

Jothikumar N, Mull BJ, Brant SV, Loker ES, Collinson J, Secor WE, et al. Real-Time PCR and Sequencing Assays for Rapid Detection and Identification of Avian Schistosomes in Environmental Samples. Applied and Environmental Microbiology. 2015;81(12):4207-15. doi: 10.1128/aem.00750-15. PubMed PMID: WOS:000354864000030.

Koh C, Canini L, Dahari H, Cooper S, Cory D, Winters MA, et al. Dose-dependent decrease in hepatitis delta virus (HDV) RNA achieved with the oral prenylation inhibitor lonafarnib in a proof-of-concept, randomised, double-blinded, placebo-controlled study in patients with chronic HDV infection. Journal of Clinical Virology. 2015;69:247-. doi: 10.1016/j.jcv.2015.06.071. PubMed PMID: WOS:000358318400109.

Krasnec KV, Sharp AR, Williams TL, Miller RD. The opossum MHC genomic region revisited. Immunogenetics. 2015;67(4):259-64. doi: 10.1007/s00251-015-0826-5. PubMed PMID: WOS:000351205100006.

LaPatra S, Kao S, Erhardt EB, Salinas I. Evaluation of dual nasal delivery of infectious hematopoietic necrosis virus and enteric red mouth vaccines in rainbow trout (Oncorhynchus mykiss). Vaccine. 2015;33(6):771-6. doi: 10.1016/j.vaccine.2014.12.055. PubMed PMID: WOS:000349576100004.

Le Goues C, Holtschulte N, Smith EK, Brun Y, Devanbu P, Forrest S, et al. The ManyBugs and IntroClass Benchmarks for Automated Repair of C Programs. Ieee Transactions on Software Engineering. 2015;41(12):1236-56. doi: 10.1109/tse.2015.2454513. PubMed PMID: WOS:000366470700006.

Letendre K, Donnadieu E, Moses ME, Cannon JL. Bringing Statistics Up to Speed with Data in Analysis of Lymphocyte Motility. Plos One. 2015;10(5). doi: 10.1371/journal.pone.0126333. PubMed PMID: WOS:000354545600047.

Lowrey L, Woodhams DC, Tacchi L, Salinas I. Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin. Applied and Environmental Microbiology. 2015;81(19):6915-25. doi: 10.1128/aem.01826-15. PubMed PMID: WOS:000363459800039.

Luo S, Perelson AS. Competitive exclusion by autologous antibodies can prevent broad HIV-1 antibodies from arising. Proceedings of the National Academy of Sciences of the United States of America. 2015;112(37):11654-9. doi: 10.1073/pnas.1505207112. PubMed PMID: MEDLINE:26324897.

Luo S, Perelson AS. The challenges of modelling antibody repertoire dynamics in HIV infection. Philosophical Transactions of the Royal Society B-Biological Sciences. 2015;370(1676). doi: 10.1098/rstb.2014.0247. PubMed PMID: WOS:000359514600012.

Mrass P, Ellenwood S, Moses M, Cannon J. Tracking of CD8+effector T cells in intact lung: analysis of environmental guidance. Journal of Immunology. 2015;194. PubMed PMID: WOS:000379404502208.

Papenfuss AT, Feng Z-P, Krasnec K, Deakin JE, Baker ML, Miller RD. Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage. Bmc Genomics. 2015;16. doi: 10.1186/s12864-015-1745-4. PubMed PMID: WOS:000358193300001.

Perelson AS, Guedj J. Modelling hepatitis C therapy-predicting effects of treatment. Nature Reviews Gastroenterology & Hepatology. 2015;12(8):437-45. doi: 10.1038/nrgastro.2015.97. PubMed PMID: WOS:000359391200004.

Pinto HA, de Melo AL, Brant SV. Where are the South American freshwater turtle blood flukes (Trematoda: Spirorchiidae)? The first morphological and molecular analysis of spirorchiid cercariae from freshwater snails in Brazil. Parasitology International. 2015;64(6):553-8. doi: 10.1016/j.parint.2015.08.001. PubMed PMID: WOS:000362923400013.

Salinas IMP, Rodriguez VPG, Garcia-Erce JA. Therapeutic leukapheresis: 9-year experience in a University Hospital. Blood Transfusion. 2015;13(1):46-52. doi: 10.2450/2014.0310-13. PubMed PMID: WOS:000351423200007.

Salinas I, LaPatra SE, Erhardt EB. Nasal vaccination of young rainbow trout (Oncorhynchus mykiss) against infectious hematopoietic necrosis and enteric red mouth disease. Developmental and Comparative Immunology. 2015;53(1):105-11. doi: 10.1016/j.dci.2015.05.015. PubMed PMID: WOS:000360772900013.

Sarkies P, Selkirk ME, Jones JT, Blok V, Boothby T, Goldstein B, et al. Ancient and Novel Small RNA Pathways Compensate for the Loss of piRNAs in Multiple Independent Nematode Lineages. Plos Biology. 2015;13(2). doi: 10.1371/journal.pbio.1002061. PubMed PMID: WOS:000352080100008.

Serra-Planas E, Aguilera E, Granada ML, Soldevila B, Salinas I, Reverter JL, et al. High prevalence of vitamin D deficiency and lack of association with subclinical atherosclerosis in asymptomatic patients with Type 1 Diabetes Mellitus from a Mediterranean area. Acta Diabetologica. 2015;52(4):773-9. doi: 10.1007/s00592-014-0699-3. PubMed PMID: WOS:000358085800016.

Smith NMG, Mlcochova P, Watters SA, Aasa-Chapman MMI, Rabin N, Moore S, et al. Proof-of-Principle for Immune Control of Global HIV-1 Reactivation In Vivo. Clinical Infectious Diseases. 2015;61(1):120-8. doi: 10.1093/cid/civ219. PubMed PMID: WOS:000359323500019.

Steinkamp MP, Winner KK, Moses M, Jiang Y, Wilson BS. Modeling antibody penetration into metastatic ovarian tumors after intravenous or intraperitoneal delivery. Clinical Cancer Research. 2015;21. doi: 10.1158/1557-3265.ovcasymp14-poster-tech-1124. PubMed PMID: WOS:000361386100047.

Sweazea KL, Simperova A, Juan T, Gadau A, Brant SV, Deviche P, et al. Pathophysiological responses to a schistosome infection in a wild population of mourning doves (Zenaida macroura). Zoology. 2015;118(6):386-93. doi: 10.1016/j.zool.2015.07.001. PubMed PMID: WOS:000366768900002.

Tacchi L, Lowrey L, Musharrafieh R, Crossey K, Larragoite ET, Salinas I. Effects of transportation stress and addition of salt to transport water on the skin mucosal homeostasis of rainbow trout (Oncorhynchus mykiss). Aquaculture. 2015;435:120-7. doi: 10.1016/j.aquaculture.2014.09.027. PubMed PMID: WOS:000345229500017.

Tacchi L, Lowrey L, Musharrafieh R, Crossey K, Larragoite ET, Salinas I. Effects of transportation stress and addition of salt to transport water on the skin mucosal homeostasis of rainbow trout (Oncorhynchus mykiss) (vol 435, pg 1, 2015). Aquaculture. 2015;439:66-7. doi: 10.1016/j.aquaculture.2014.12.035. PubMed PMID: WOS:000349620900010.

Tacchi L, Larragoite ET, Munoz P, Amemiya CT, Salinas I. African Lungfish Reveal the Evolutionary Origins of Organized Mucosal Lymphoid Tissue in Vertebrates. Current Biology. 2015;25(18):2417-24. doi: 10.1016/j.cub.2015.07.066. PubMed PMID: WOS:000361885100026.

Yue L, Pfafferott KJ, Baalwa J, Conrod K, Dong CC, Chui C, et al. Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients. Plos Pathogens. 2015;11(1). doi: 10.1371/journal.ppat.1004565. PubMed PMID: WOS:000349106100011.

Zhang S-M, Buddenborg SK, Adema CM, Sullivan JT, Loker ES. Altered Gene Expression in the Schistosome-Transmitting Snail Biomphalaria glabrata following Exposure to Niclosamide, the Active Ingredient in the Widely Used Molluscicide Bayluscide. Plos Neglected Tropical Diseases. 2015;9(10). doi: 10.1371/journal.pntd.0004131. PubMed PMID: WOS:000364459600036.