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Collage of Research subjects

2014 Publications

Van Horn, David J., Okie, Jordan G., Buelow, Heather N., Gooseff, Michael N., Barrett, John E., Takacs-Vesbach, Cristina D. (2014). Soil Microbial Responses to Increased Moisture and Organic Resources along a Salinity Gradient in a Polar Desert. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 80(10):3034-3043.

Torin Adamson, John Baxter, Kasra Manavi, April Suknot, Bruna Jacobson, Patrick Kelley, Lydia Tapia, "Molecular Tetris: Crowdsourcing Molecular Docking Using Path-Planning and Haptic Devices", ACM SIGGRAPH Motion in Games (MIG), pp. 133-138, Los OTHAngeles, CA, Nov 2014.

Song, H., Hora, B., Bhattacharya, T., Goonetilleke, Liu, M. K. P., Wiehe, K., Li, H., Iyer, S., McMichael, A., Perelson. A. S. and Gao, F. (2014). Reversion and T cell escape mutations compensate the fitness loss of a CD8+ T cell escape mutant in their cognate transmitted/founder virus. PLoS One 10, e102734.

Sharma, LK, Cupit, PM, Goronga, T, Webb, TR and Cunningham, C. 2014. Design and synthesis of molecular probes for the determination of the target of the anthelmintic drug praziquantel. Bioorganic & Medicinal Chemistry Letters 24: 2469-2472.

Saunders, N. R., Noor, N. M., Dziegielewska, K. M., Wheaton, B. J., Liddelow, S. A., Steer, D. L., Ek, J., Habgood, M. D., Wakefield, M. J., Lindsay, H., Truettner, J., Miller, R. D., Smith, A. I., Dietrich, W. D. 8.2014. Age-dependent transcriptome and proteome following transection of neonatal spinalcord of Monodelphis domestica (South American Grey Short-tailed opossum). PLoS ONE 9(6): e99080.

Rafael Figueroa, Aleksandra Faust, Patricio Cruz, Lydia Tapia, and Rafael Fierro, Rein- forcement Learning for Balancing a Flying Inverted Pendulum, In Proceedings of the 11th World Congress on Intelligent Control and Automation (WCICA), Shenyang, China, June 2014.

Oas, Sandy T., Bryantsev, Anton L., Cripps, Richard M. (2014). Arrest is a regulator of fiber-specific alternative splicing in the indirect flight muscles of Drosophila. JOURNAL OF CELL BIOLOGY 206(7):895-908.

Nolan JR, Bergthorsson U, Adema CM (2014) Physella acuta: atypical gene order among mitochondrial genomes of Panpulmonata. Journal of Molluscan Studies, doi:10.1093/mollus/eyu025.

Mwangi, IN, Sanchez, MC, Mkoji, GM, Agola, LE, Runo, SM, Cupit, PM, Cunningham, C. 2014. Praziquantel sensitivity of Kenyan Schistosoma mansoni isolates and the generation of a laboratory strain with reduced susceptibility to the drug. International Journal for Parasitology: Drugs and Drug Resistance 4: 296-300.

Mutuku MW, Dweni CK, Mwangi M, Kinuthia JM, Mwangi IN, Maina GM, Agola LE, Zhang SM, Maranga R, Loker ES, Mkoji GM (2014) Field-derived Schistosoma mansoni and Biomphalaria pfeifferi in Kenya: a compatible association characterized by lack of strong local adaptation, and presence of some snails able to persistently produce cercariae for over a year. Parasit Vectors. 2014 Nov 26;7(1):533.

Miao, H., Sangster, M. Y., Livingstone, A. M., Hilchey, S., Zhang, L., Topham, D. J., Mosmann, T. R., Holden-Wilse, J., Perelson, A. S., Wu, H. and Zand, M. (2014). Modeling the dynamics and migratory pathways of virus-specific antibody secreting cell populations in primary influenza infection. PLoS One 9, e104781.

Miller, R. D. and Hansen V. L. 2014. Immunoglobulin genetics of marsupials and monotremes. In: Comparative Immunoglobulin Genetics. Ed. Kaushik, A., Nova Publishing.

Lujan, D. A., Greenberg, J. A., Hung, A. S., Dimenna, M. A., Hofkin, B. V. (2014). Evaluation of Seasonal Feeding Patterns of West Nile Virus Vectors in Bernalillo County, New Mexico, United States: Implications for Disease Transmission. JOURNAL OF MEDICAL ENTOMOLOGY 51(1):264-268.

Lelo AE, Mburu DN, Magoma GN, Mungai BN, Kihara JH, Mwangi IN, Maina GM, Kinuthia JM, Mutuku MW, Loker ES, Mkoji GM, Steinauer ML. No apparent reduction in schistosome burden or genetic diversity following four years of school-based mass drug administration in mwea, central kenya, a heavy transmission area. PLoS Negl Trop Dis. 2014 Oct 9;8(10):e3221. doi: 10.1371/journal.pntd.0003221.

Kristoff J., Haret-Richter G., Ma D., Ribeiro R. M., Xu C., Cornell E., Stock J. L., He T., Mobley A. D., Ross S., Trichel A., Wilson C., Tracy R., Landay A., Apetrei C., Pandrea I. (2014) Early Microbial Translocation Blockade Reduces SIV-mediated Inflammation and Viral Replication. J Clin Invest 124: 2802-2806

Kasinathan, RS, Sharma, LK, Cunningham, C, Webb TR and Greenberg R.M. 2014. Inhibition or knockdown of ABC transporters enhances susceptibility of adult and juvenile schistosomes to praziquantel. PLoS Neglected Tropical Diseases 8:e3265.

Hecker, Joshua P., and Melanie E. Moses. "Real-time Evolution of iAnt Robot Foraging Strategies." ALIFE 14: The Fourteenth Conference on the Synthesis and Simulation of Living Systems. Vol. 14.

Hao-Tien Chiang, Nick Malone, Kendra Lesser, Meeko Oishi, Lydia Tapia, "Aggressive Moving Obstacle Avoidance Using a Stochastic Reachable Set Based Potential Field", In Proceedings of the Workshop on the Algorithmic Foundations of Robotics (WAFR), Istanbul, Turkey, Aug 2014.

Graw, F., Balagopal, A., Kandathil, A. J., Ray, S. C., Thomas, D. L., Ribeiro, R. M. and Perelson, A. S. (2014). Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes. PLoS Comp. Biol. 10, e1003934.

Conway, J. M. and Perelson, A. S. (2014). Hepatitis C virus infection model with time-varying drug effectiveness: solution and analysis. PLoS Comp. Biol. 10, e1003769.

Ciupe, S. M., Ribeiro, R. M. and Perelson, A. S. (2014). Antibody responses during hepatitis B viral infection. PLoS Comp. Biol. 10, e1003730.

Althaus, C. L., Joos, B, Perelson, A. S. and Gunthard, H. F. (2014). Quantifying the turnover of transcriptional subclasses of HIV-1 infected cells. PLoS Comp. Biol. 10, e1003871.